Research Publications

2022

114.Complete Genomes of Theileria orientalis Chitose and Buffeli Genotypes Reveal within Species Translocations and Differences in ABC Transporter Content

Yam, J, Bogema, D.R., Micallef, M.L, Djordjevic, S.P, Jenkins, C. Pathogens 2022, 11, 801. Doi:10.3390/pathogens11070801

113. Interspecies Transmission of CMY-2-Producing Escherichia coli Sequence Type 963 Isolates between Humans and Gulls in Australia.

Medvecky M, Papagiannitsis CC, Wyrsch ER, Bitar I, Cummins ML, Djordjevic SP, Dolejska M. Antimicrobial Chemotherapy Jul 5. doi:10.1128/msphere.00238-22.

112. Phylogenetic diversity analysis of shotgun metagenomic reads describes gut microbiome development and treatment effects in the post-weaned pig.

Gaio D, DeMaere MZ, Anantanawat K, Eamens GJ, Falconer L, Chapman T, Djordjevic S, Darling A. PLOS ONE 17(6): e0270372. doi:10.1371/journal.pone.0270372.

111. Genomic and Temporal Trends in Canine ExPEC Reflect Those of Human ExPEC.

Elankumaran P, Cummins ML, Browning GF, Marenda MS, Reid CJ, Djordjevic SP. Microbiol Spectr. 2022 Jun 29;10(3):e0129122. doi: 10.1128/spectrum.01291-22.

110. Genomic Analysis of Carbapenem-Resistant Comamonas in Water Matrices: Implications for Public Health and Wastewater Treatments.

Hem S, Wyrsch ER, Drigo B, Baker DJ, Charles IG, Donner E, Jarocki VM, Djordjevic SP. Appl Environ Microbiol, 88 (13), 2022 Jun 16. doi: 10.1128/aem.00646-22.

109. Genomic Analysis of an I1 Plasmid Hosting a sul3-Class 1 Integron and blaSHV-12 within an Unusual Escherichia coli ST297 from Urban Wildlife

Wyrsch ER, Dolejska M, Djordjevic SP. Microorganisms. 2022; 10(7):1387. Doi:10.3390/microorganisms10071387

108. F Plasmid Lineages in Escherichia coli ST95: Implications for Host Range, Antibiotic Resistance, and Zoonoses.

Cummins ML, Reid CJ, Djordjevic SP. mSystems. 2022 Jan 25:e0121221. doi: 10.1128/msystems.01212-21.

107. Close genetic linkage between human and companion animal extraintestinal pathogenic Escherichia coli ST127.

Elankumaran P, Browning GF, Marenda MS, Reid CJ, Djordjevic SP. Current Research in Microbial Sciences, 100106. doi:10.1016/j.crmicr.2022.100106

106. A role for ColV plasmids in the evolution of pathogenic Escherichia coli ST58

Reid CJ, Cummins ML, Börjesson S, Brouwer MSM, Hasman H, Hammerum AM, Roer L, Hess S, Berendonk T, Nešporová K, Haenni M, Madec J-Y, Bethe A, Michael GB, Schink A-K, Schwarz S, Monika Dolejska D, Djordjevic SP. Nature Communications 13(1):683. doi:10.1038/s41467-022-28342-4.

105. Complete Genome Sequence of Pasteurella multocida Sequence Type 394, Isolated from a Case of Bovine Respiratory Disease in Australia

Roy Chowdhury P, Alhamami T, Venter H, Veltman T, Carr M, Mollinger J, Trott DJ, Djordjevic SP. Microbiol Resour Announc. 2022 Mar 17;11(3):e0089021. doi: 10.1128/mra.00890-21.

2021

104. Pesticide effects on nitrogen cycle related microbial functions and community composition.

Sim JXF, Doolette CL, Vasileiadis S, Drigo B, Wyrsch ER, Djordjevic SP, Donner E, Karpouzas DG, Lombi E. (2021). Sci Total Environ. 2022 Feb 10;807(Pt 1):150734. doi: 10.1016/j.scitotenv.2021.150734.

103.Progressing Antimicrobial Resistance Sensing Technologies across Human, Animal, and Environmental Health Domains.

Fitzpatrick KJ, Rohlf HJ, Sutherland TD, Koo KM, Beckett S, Okelo WO, Keyburn AL, Morgan BS, Drigo B, Trau M, Donner E, Djordjevic SP, De Barro PJ. (2021). ACS Sens. 2021 Dec 7. doi: 10.1021/acssensors.1c01973.

102.Multidrug-Resistant Lineage of Enterotoxigenic Escherichia coli ST182 With Serotype O169:H41 in Airline Waste.

Jarocki, V. M., Heß, S., Anantanawat, K., Berendonk, T. U., & Djordjevic, S. P. Frontiers in microbiology, 12, 731050. Doi: 10.3389/fmicb.2021.731050.

101.Post-weaning shifts in microbiome composition and metabolism revealed by over 25?000 pig gut metagenome-assembled genomes.

Gaio D, DeMaere MZ, Anantanawat K, Chapman TA, Djordjevic SP, Darling AE. Microb Genom. 2021 Aug;7(8):000501. doi: 10.1099/mgen.0.000501.

100. Monitoring antibiotic resistance genes in wastewater treatment: Current strategies and future challenges

Anh Q. Nguyen, Hang P. Vu, Luong N. Nguyen, Qilin Wang, Steven P. Djordjevic, Erica Donner, Huabing Yin, Long D. Nghiem. Science of The Total Environment 783, August 2021, 146964.Doi:10.1016/j.scitotenv.2021.146964.

99. First Emergence of Resistance to Macrolides and Tetracycline Identified in Mannheimia haemolytica and Pasteurella multocida Isolates from Beef Feedlots in Australia

Alhamami T, Chowdhury PR, Gomes N, Carr M, Veltman T, Khazandi M, Mollinger J, Deutscher AT, Turni C, Mahdi L, Venter H, Abraham S, Djordjevic SP, Trott DJ. Microorganisms. 2021; 9(6):1322. Doi:10.3390/microorganisms9061322.

98. A large-scale metagenomic survey dataset of the post-weaning piglet gut lumen

Gaio D, DeMaere MZ, Anantanawat K, Eamens GJ, Liu M, Zingali T, Falconer L, Chapman TA, Djordjevic SP, Darling AE. GigaScience 10, 6, June 2021. Doi:10.1093/gigascience/giab039.

97. Dynamics of the Sydney rock oyster microbiota before and during a QX disease event

Nguyen VK, King WL, Siboni N, Mahbub KR, Rahman HM, Jenkins C, Dove M, O’Connor W, Seymour JR, Labbate M. Aquaculture 541, 30 August 2021. Doi: 10.1016/j.aquaculture.2021.736821.

96. Epidemic HI2 Plasmids Mobilising the Carbapenemase Gene blaIMP-4 in Australian Clinical Samples Identified in Multiple Sublineages of Escherichia coli ST216 Colonising Silver Gulls

Tarabai H, Wyrsch ER, Bitar I, Dolejska M, Djordjevic SP. Microorganisms. 2021; 9(3):567. doi: 10.3390/microorganisms9030567.

95. Antimicrobial Resistance Profile and ExPEC Virulence Potential in Commensal Escherichia coli of Multiple Sources

Massella E, Giacometti F, Bonilauri P, Reid CJ, Djordjevic SP, Merialdi G, Bacci C, Fiorentini L, Massi P, Bardasi L, Rubini S, Savini F, Serraino A, Piva S. Antibiotics. 2021; 10(4):351. Doi: 10.3390/antibiotics10040351.

94. Protein cleavage influences surface protein presentation in Mycoplasma pneumoniae

Berry IJ, Widjaja M, Jarocki, V.M. et al. Sci Rep 11, 674. Doi:10.1038/s41598-021-86217-y.

2020

93. Genomic Surveillance for One Health Antimicrobial Resistance: Understanding Human, Animal, and Environmental Reservoirs and Transmission

Steven P. Djordjevi Veronica M. Jarocki, Branwen Morgan, Erica Donner. In Handbook of Environmental Chemistry 91: 71-100. doi:10.1007/698_2020_626

92. Genomic analysis of trimethoprim-resistant extraintestinal pathogenic Escherichia coli and recurrent urinary tract infections

Microb Genom. 2020 Dec;6(12):mgen000475. Epub 2020 Nov 18. doi: 10.1099/mgen.0.000475.

91. Whole-Genome Sequence Analysis of an Extensively Drug-Resistant Salmonella enterica Serovar Agona Isolate from an Australian Silver Gull (Chroicocephalus novaehollandiae) Reveals the Acquisition of Multidrug Resistance Plasmids

Cummins ML, Sanderson-Smith M, Newton P, Carlile N, Phalen DN, Maute K, Monahan LG, Hoye BJ, Djordjevic SP. mSphere. 2020 Nov 25;5(6):e00743-20. doi:10.1128/mSphere.00743-20.

90. Escherichia coli ST8196 is a novel, locally evolved, and extensively drug resistant pathogenic lineage within the ST131 clonal complex

Hastak P, Fourment M, Darling AE, Gottlieb T, Cheong E, Merlino J, Myers GS, Djordjevic SP, Roy Chowdhury P. Emerging Microbes & Infections Volume 9, 2020 – Issue 1. doi:10.1080/22221751.2020.1797541.

89. Escherichia coli Sequence Type 457 Is an Emerging Extended-Spectrum-?-Lactam-Resistant Lineage with Reservoirs in Wildlife and Food-Producing Animals

Nesporova K, Wyrsch ER, Valcek A, Bitar I, Chaw K, Harris P, Hrabak J, Literak I, Djordjevic SP, Dolejska M. American Society for Microbiology Journals, online. Doi: 10.1128/AAC.01118-20

88. Snapshot Study of Whole Genome Sequences of Escherichia coli from Healthy Companion Animals, Livestock, Wildlife, Humans and Food in Italy

Massella E, Reid CJ, Cummins ML, Anantanawat K, Zingali T, Serraino A, Piva S, Giacometti F, Djordjevic SP. Antibiotics 2020, 9 (11), 782. Doi:10.3390/antibiotics9110782.

87. Genomic analysis of phylogenetic group B2 extraintestinal pathogenic E. coli causing infections in dogs in Australia

Kidsley AK, O’Dea M, Saputra S, Jordan D, Johnson JR, Gordon DM, Turni C, Djordjevic SP, Abraham S, Trott DJ. Veterinary Microbiology 248, September 2020, 108783. Doi: 10.1016/j.vetmic.2020.108783.

86.The Sydney Rock Oyster microbiota is influenced by location, season and genetics

Nguyen VK, King WL, Siboni N, Mahbub KR, Dove M, O’Connor W, Seymour JR, Labbate M. Aquaculture 735472. Doi:10.1016/j.aquaculture.2020.735472.

85. Whole-genome sequence analysis of environmental Escherichia coli from the faeces of straw-necked ibis (Threskiornis spinicollis) nesting on inland wetlands

Wyrsch ER, Chowdhury PR , Wallis L, Cummins ML, Zingali T, Brandis KJ, Djordjevic SP. Microbial Genomics 6 (6), June 2020. Doi:10.1099/mgen.0.000385.

84. Duplication and diversification of a unique chromosomal virulence island hosting the subtilase cytotoxin in Escherichia coli ST58

Wyrsch ER, Chowdhury PR, Brandis KJ, Djordjevic SP. Microbial Genomics 6 (6), June 2020. Doi:10.1099/mgen.0.000387.

83. Genomic Characterisation of a Multiple Drug Resistant IncHI2 ST4 Plasmid in Escherichia coli ST744 in Australia

Zingali T, Chapman TA, Webster J, Chowdhury PR, Djordjevic SP. Microorganisms 8 (6), 896. doi:10.3390/microorganisms8060896.

82. Whole Genome Sequencing Analysis of Porcine Faecal Commensal Escherichia coli Carrying Class 1 Integrons from Sows and Their Offspring

Zingali T, Reid CJ, Chapman TA, Gaio D, Liu M, Darling AE, Djordjevic SP. Microorganisms 2020, 8(6), 843. doi.org/10.3390/microorganisms8060843

81. Whole genome sequence comparison of avian pathogenic Escherichia coli from acute and chronic salpingitis of egg laying hens

Poulsen, L.L., Kudirkiene, E., Jørgensen, S.L, Cummins ML, Djordjevic SP, Christensen JP, Christensen H, Bisgaard M, Thøfner I. BMC Vet Res 16, 148. doi:10.1186/s12917-020-02369-5.

80. Genomic profiling of Escherichia coli isolates from bacteraemia patients: a 3-year cohort study of isolates collected at a Sydney teaching hospital

Hastak P, Cummins ML, Gottlieb T, Cheong E, Merlino J, Myers GSA, Djordjevic SP, Chowdhury PR. Microb Genom, 6 (5). doi.org/10.1099/mgen.0.000371

79. Molecular Analysis of an lncF ColV-like Plasmid Lineage That Carries a Complex Resistance Locus with a Trackable Genetic Signature

McKinnon J, Roy Chowdhury P, Djordjevic SP. Microbial Drug Resistance. doi.org/10.1089/mdr.2019.0277.

78. Salmonella Genomic Island 1 is Broadly Disseminated within Gammaproteobacteriaceae

Cummins ML, Hamidian M, Djordjevic SP. Microorganisms 2020, 8 (2):161. doi: 10.3390/microorganisms8020161.

77. Whole Genome Sequencing of Escherichia coli From Store Bought Produce

Reid CJ, Blau K, Jechalke S, Smalla K, Djordjevic SP. Front. Microbiol. 10:3050. doi: 10.3389/fmicb.2019.03050.

76. Escherichia coli ST302: genomic analysis of virulence potential and antimicrobial resistance mediated by mobile genetic elements

Jarocki VM, Reid CJ, Chapman TA, Djordjevic SP. Front. Microbiol, 10:3098. doi: 10.3389/fmicb.2019.03098.

2019

75. Diversity of P1 phage-like elements in multidrug resistant Escherichia coli

Venturini C, Zingali T, Wyrsch ER, Bowring B, Iredell J, Partridge SR, Djordjevic SP. Sci Rep 9 (1), 18861. doi:10.1038/s41598-019-54895-4.

74. The Diverse Functional Roles of Elongation Factor Tu (EF-Tu) in Microbial Pathogenesis

Harvey KL, Jarocki VM, Charles IG, Djordjevic SP. Front Microbiol. 2019 Oct 24; 10: 2351. doi: 10.3389/fmicb.2019.02351.

73. Genetic Features of mcr-1 Mediated Colistin Resistance in CMY-2-Producing Escherichia coli From Romanian Poultry

Maciuca IE, Cummins ML, Cozma AP, Rimbu CM, Guguianu E, Panzaru C, Licker M, Szekely E, Flonta M, Djordjevic SP, Timofte D. Front Microbiol, 2019 Oct 10; 10: 2267. doi: 10.3389/fmicb.2019.02267.

72. Mycoplasma hyopneumoniae surface-associated proteases cleave bradykinin, substance P, neurokinin A and neuropeptide Y

Jarocki, VM, Raymond, BBA, Tacchi, JL. Padula MP and Djordjevic SP. Sci Rep 9, 14585 (2019). Doi:10.1038/s41598-019-51116-w.

71. A comparison of virulence genes, antimicrobial resistance profiles and genetic diversity of avian pathogenic Escherichia coli (APEC) isolates from broilers and broiler breeders in Thailand and Australia

Thomrongsuwannakij T, Blackall PJ, Djordjevic SP, Cummins ML and Chansiripornchai N. Avian Pathology, 49:5, 457-466. DOI: 10.1080/03079457.2020.1764493.

70. Vibrio cholerae residing in food vacuoles expelled by protozoa are more infectious in vivo

Espinoza-Vergara G, Noorian P, Silva-Valenzuela CA, Raymond BBA, Allen C, Mozammel Hoque M, Sun S,. Johnson MS, Pernice M, Kjelleberg S, Djordjevic SP, Labbate M, Camilli A, McDougald D. Nature Microbiology. 2019 Sept 23; 4: 2466–2474. doi:10.1038/s41564-019-0563-x.

69. Hackflex: low cost Illumina sequencing library construction for high sample counts

Gaio D, To J, Liu M, Monahan LG, Anantanawat K, Darling AE. 2019 Sep 23. doi: 10.1101/779215.

68. Clonal ST131-H22 Escherichia coli strains from a healthy pig and a human urinary tract infection carry highly similar resistance and virulence plasmids

Reid CJ, McKinnon J, Djordjevic SP. Microb Genom. 2019 Sep; 5(9): e000295. doi: 10.1099/mgen.0.000295

67. Z/I1 Hybrid Virulence Plasmids Carrying Antimicrobial Resistance genes in S. Typhimurium from Australian Food Animal Production

Wyrsch ER, Hawkey J, Judd LM, Haites R, Holt KE, Djordjevic SP, Billman-Jacobe H. Microorganisms. 2019 Sep; 7(9): 299. doi: 10.3390/microorganisms7090299.

66. Salmonella Genomic Island 1B Variant Found in a Sequence Type 117 Avian Pathogenic Escherichia coli Isolate

Cummins ML, Roy Chowdhury P, Marenda MS, Browning GF, Djordjevic SP. mSphere. 2019 May-Jun; 4(3): e00169-19. doi: 10.1128/mSphere.00169-19.

65. Formylated N-terminal methionine is absent from the Mycoplasma hyopneumoniae proteome: Implications for translation initiation

Jarocki VM, Steele JR, Widjaja M, Tacchi JL, Padula MP, Djordevic SP. IJMM 2019 May 9; doi: 10.1016/j.ijmm.2019.03.005.

64. Simulated Marine Heat Wave Alters Abundance and Structure of Vibrio Populations Associated with the Pacific Oyster Resulting in a Mass Mortality Event

Green TJ, Siboni N, King WL, Labbate M, Seymour JR, Raftos, D. Microbial Ecology. April 2019, 77(3):736–747. doi: 10.1007/s00248-018-1242-9.

63. Terminomics Methodologies and the Completeness of Reductive Dimethylation: A Meta-Analysis of Publicly Available Datasets

Hurtado SM, Berry IJ, Strange N, Djordjevic, SP and Padula MP. Proteomes, 7(2), 11. Doi:10.3390/proteomes7020011

62. A One Health genomic approach to antimicrobial resistance is essential for generating relevant data for a holistic assessment of the biggest threat to public health

Djordjevic SP and Morgan BS. Microbiology Australia 40(2) 73-76 Doi:10.1071/MA19021.

61. Complete Sequences of Multiple-Drug Resistant IncHI2 ST3 Plasmids in Escherichia coli of Porcine Origin in Australia

Wyrsch ER, Reid CJ, DeMaere MZ, Liu MY, ChapmanTA, Roy Chowdhury P and Djordjevic SP. Front. Sustain. Food Syst., 26 March 2019. doi.org/10.3389/fsufs.2019.00018.

60. Identification of a novel lineage of plasmids within phylogenetically diverse subclades of IncHI2-ST1 plasmids

Roy Chowdhury P, Fourment M, DeMaere MZ, Monahan L, Merlino J, Gottlieb T, Darling AE, Djordjevic SP. Plasmid. 2019 Mar;102:56-61. doi: 10.1016/j.plasmid.2019.03.002.

59. Variability in the Composition of Pacific Oyster Microbiomes Across Oyster Families Exhibiting Different Levels of Susceptibility to OsHV-1 ?var Disease

King WL, Siboni N, Williams NLR, Kahlke, Nguyen KV, Jenkins C, Dove M, O’Connor W, Seymour JR and Labbate M. Frontiers in Microbiology, 11 March 2019. doi: 10.3389/fmicb.2019.00473.

58. Characterisation of the Pacific Oyster Microbiome During a Summer Mortality Event

King WL, Jenkins C, Go J, Siboni, Seymour JR, Labbate M. Microbial Ecology February 2019, 77, Issue 2, pp 502–512. doi.org/10.1007/s00248-018-1226-9

57. Whole-genome analysis of extraintestinal Escherichia coli sequence type 73 from a single hospital over a 2 year period identified different circulating clonal groups.

Bogema DR, McKinnon J, Liu M, Hitchick N, Miller N, Venturini C, Iredell J, Darling AE, Roy Chowdury P, Djordjevic SP. Microb Genom. 2019 Feb 27. doi: 10.1099/mgen.0.000255.

56. High contiguity genome sequence of a multidrug-resistant hospital isolate of Enterobacter hormaechei.

Monahan LG, DeMaere MZ, Cummins ML, Djordjevic SP, Roy Chowdhury P, Darling AE.Gut Pathog. 2019 Feb 13;11:3. doi: 10.1186/s13099-019-0288-7

55. Whole genome sequence analysis of Australian avian pathogenic Escherichia coli that carry the class 1 integrase gene.

Cummins ML, Reid CJ, Roy Chowdhury P, Bushell RN, Esbert N, Tivendale KA, Noormohammadi AH, Islam S, Marenda MS, Browning GF, Markham PF, Djordjevic SP. Microb Genom. 2019 Feb;5(2). doi: 10.1099/mgen.0.000250.

54. Multidrug Resistant Uropathogenic Escherichia coli ST405 With a Novel, Composite IS26Transposon in a Unique Chromosomal Location.

Roy Chowdhury P, McKinnon J, Liu M, Djordjevic SP. Front Microbiol. 2019 Jan 8;9:3212. doi: 10.3389/fmicb.2018.03212.

53. Oyster disease in a changing environment: Decrypting the link between pathogen, microbiome and environment.

King WL, Jenkins C, Seymour JR, Labbate M. Marine Environmental Research. Volume 143, January 2019, Pages 124-140. doi.org/10.1016/j.marenvres.2018.11.007

2018

52. Mycoplasma hyopneumoniae resides intracellularly within porcine epithelial cells.

Raymond BBA, Turnbull L, Jenkins C, Madhkoor R, Schleicher I, Uphoff CC, Whitchurch CB, Rohde M, Djordjevic SP. Sci Rep. 2018 Dec 6;8(1):17697. doi: 10.1038/s41598-018-36054-3.

51. Environmental dimensions of antibiotic resistance: assessment of basic science gaps.

Smalla K, Cook K, Djordjevic SP, Klümper U, Gillings M. FEMS Microbiol Ecol. 2018 Dec 1;94(12). doi: 10.1093/femsec/fiy195.

50. Genomic analysis of multidrug-resistant Escherichia coli ST58 causing urosepsis.

McKinnon J, Roy Chowdhury P, Djordjevic SP. Int J Antimicrob Agents. 2018 Sep;52(3):430-435. doi: 10.1016/j.ijantimicag.2018.06.017.

49. Extracellular DNA release from the genome-reduced pathogen Mycoplasma hyopneumoniae is essential for biofilm formation on abiotic surfaces.

Raymond BBA, Jenkins C, Turnbull L, Whitchurch CB, Djordjevic SP. Sci Rep. 2018 Jul 10;8(1):10373. doi: 10.1038/s41598-018-28678-2.

48. Analysis of Theileria orientalis draft genome sequences reveals potential species-level divergence of the Ikeda, Chitose and Buffeli genotypes.

Bogema DR, Micallef ML, Liu M, Padula MP, Djordjevic SP, Darling AE, Jenkins C.BMC Genomics. 2018 Apr 27;19(1):298. doi: 10.1186/s12864-018-4701-2.

47. Corrigendum: Clostridium chauvoei, an Evolutionary Dead-End Pathogen.

Rychener L, In-Albon S, Djordjevic SP, Chowdhury PR, Nicholson P, Ziech RE, de Vargas AC, Frey J, Falquet L. Front Microbiol. 2018 Mar 6;9:421. doi: 10.3389/fmicb.2018.00421.

46. Extracellular Actin Is a Receptor for Mycoplasma hyopneumoniae.

Raymond BBA, Madhkoor R, Schleicher I, Uphoff CC, Turnbull L, Whitchurch CB, Rohde M, Padula MP, Djordjevic SP. Front Cell Infect Microbiol. 2018 Feb 27;8:54. doi: 10.3389/fcimb.2018.00054.

2017

45. Porcine commensal Escherichia coli: a reservoir for class 1 integrons associated with IS26.

Reid CJ, Wyrsch ER, Roy Chowdhury P, Zingali T, Liu M, Darling AE, Chapman TA, Djordjevic SP. Microb Genom. 2017 Dec;3(12). doi: 10.1099/mgen.0.000143.

44. Identification of a novel qnrA allele, qnrA8, in environmental Shewanella algae.

Melvold JA, Wyrsch ER, McKinnon J, Roy Chowdhury P, Charles IG, Djordjevic SP. J Antimicrob Chemother. 2017 Oct 1;72(10):2949-2952. doi: 10.1093/jac/dkx226.

43. Evaluation of ddRADseq for reduced representation metagenome sequencing.

Liu MY, Worden P, Monahan LG, DeMaere MZ, Burke CM, Djordjevic SP, Charles IG, Darling AE. PeerJ. 2017 Sep 19;5:e3837. doi: 10.7717/peerj.3837.

42. Elongation factor Tu is a multifunctional and processed moonlighting protein.

Widjaja M, Harvey KL, Hagemann L, Berry IJ, Jarocki VM, Raymond BBA, Tacchi JL, Gründel A, Steele JR, Padula MP, Charles IG, Dumke R, Djordjevic SP. Sci Rep. 2017 Sep 11;7(1):11227. doi: 10.1038/s41598-017-10644-z.

41. N-terminomics identifies widespread endoproteolysis and novel methionine excision in a genome-reduced bacterial pathogen.

Berry IJ, Jarocki VM, Tacchi JL, Raymond BBA, Widjaja M, Padula MP, Djordjevic SP. Sci Rep. 2017 Sep 11;7(1):11063. doi: 10.1038/s41598-017-11296-9.

40. Clostridium chauvoei, an Evolutionary Dead-End Pathogen.

Rychener L, InAlbon S, Djordjevic SP, Chowdhury PR, Ziech RE, de Vargas AC, Frey J, Falquet L. Front Microbiol. 2017 Jun 9;8:1054. doi: 10.3389/fmicb.2017.01054.

39. Defined chromosome structure in the genome-reduced bacterium Mycoplasma pneumoniae

Trussart M, Yus E, Martinez S, Bau D, Tahara YO, Pengo T, Widjaja M, Kretschmer S, Swoger J, Djordjevic S, Turnbull L, Whitchurch C, Miyata M, Marti-Renom MA, Lluch, Senar M, Serrano L. Nat Commun. 2017 Mar 8;8:14665. doi: 10.1038/ncomms14665.

38. Genomic islands 1 and 2 carry multiple antibiotic resistance genes in Pseudomonas aeruginosa ST235, ST253, ST111 and ST175 and are globally dispersed

Roy Chowdhury P, Scott M, Djordjevic SP. Journal of Antimicrobial Chemotherapy. 2017 Feb 72 (2): 620-622. doi:10.1093/jac/dkw471.

2016

37. Cross reactivity among the swine mycoplasmas as identified by protein microarray

Petersen AC, Oneal DC, Seibel JR, Poel K, Dauma CL, Djordjevic SP, Minion FC. Veterinary Microbiology. 2016 Aug 30;192:204-12. doi:10.1093/jac/dkw471.

36. The quest for improved reproducibility in MALDI mass spectrometry

O’Rourke MB, Djordjevic SP, Padula MP. Mass Spectrom Rev. 2016 Jul 15. doi: 10.1002/mas.21515.

35. Genomic Microbial Epidemiology Is Needed to Comprehend the Global Problem of Antibiotic Resistance and to Improve Pathogen Diagnosis

Wyrsch ER, Roy Chowdhury P, Chapman TA, Charles IG, Hammond JM, Djordjevic SP. Front Microbiol. 2016 Jun 15;7:843. doi:10.3389/fmicb.2016.00843.

34. Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease

Roy Chowdhury P, DeMaere M, Chapman T, Worden P, Charles IG, Darling AE, Djordjevic SP. BMC Microbiol. 2016 Mar 16(1):41. doi: 10.1186/s12866-016-0653-3.

33. Genomic islands 1 and 2 play key roles in the evolution of extensively drug-resistant ST235 isolates of Pseudomonas aeruginosa

Roy Chowdhury P, Scott M, Worden P, Huntington P, Hudson B, Karagiannis T, Charles IG, Djordjevic SP. Open Biol. 2016 Mar;6(3). pii: 150175. doi: 10.1098/rsob.150175.

32. The Role of CD44 and ERM Proteins in Expression and Functionality of P-glycoprotein in Breast Cancer Cells

Pokharel D, Padula MP, Lu JF, Jaiswal R, Djordjevic SP, Bebawy M. Molecules. 2016 Mar 1;21(3):290. doi: 10.3390/molecules21030290.

31. Post-translational processing targets functionally diverse proteins in Mycoplasma hyopneumoniae

Tacchi JL., Raymond BBA, Haynes PA, Berry IJ, Widjaja M, Bogema DR, Woolley LK, Jenkins C, Minion FC, Padula MP, Djordjevic SP. Open Biology. 2016 Feb;6(2):150210. doi: 10.1098/rsob.150210.

30. The application of terminomics for the identification of protein start sites and proteoforms in bacteria

Berry IJ, Steele JR, Padula MP, Djordjevic SP. Proteomics. 2016 Jan;16(2):257-72. doi: 10.1002/pmic.201500319.

2015

29. Non-proteolytic functions of microbial proteases increases pathological complexity

Jarocki VM, Tacchi JL, Djordjevic, SP. Proteomics. 2015. Dec 10. doi: 10.1002/pmic.201400386.

28. P40 and P90 from Mpn142 are Targets of Multiple Processing Events on the Surface of Mycoplasma pneumonia

Widjaja M., Berry I, Pont E, Padula M, Djordjevic SP. Proteomes. 2015 Dec; 3(4): 512–537. doi: 10.3390/proteomes3040512.

27. A non-instrument-based method for the analysis of formalin-fixed paraffin-embedded human spinal cord via matrix-assisted laser desorption/ionisation imaging mass spectrometry

O’Rourke MB, Djordjevic SP, Padula MP. Rapid Commun Mass Spectrom. 2015 Oct 15;29(19):1836-40. doi: 10.1002/rcm.7283.

26. Exploitation of plasmin(ogen) by bacterial pathogens of veterinary significance

Raymond BBA, Djordjevic SP. Veterinary Microbiology. 2015 Jul 9;178(1-2):1-13. doi: 10.1016/j.vetmic.

25. Tn6026 and Tn6029 are found in complex resistance regions mobilised by diverse plasmids and chromosomal islands in multiple antibiotic resistant Enterobacteriaceae

Reid C, Roy Chowdhury P, Djordjevic SP. Plasmid. 2015 Jul;80:127-37. doi: 10.1016/j.plasmid.2015.04.005.

24. Temporal dynamics and subpopulation analysis of Theileria orientalis genotypes in cattle

Jenkins C, Micallef M, Alex SM, Collins D, Djordjevic SP, Bogema DR. Infection, Genetics & Evolution. 2015 Jun;32:199-207. doi: 10.1016/j.meegid.2015.03.017

23. Comparative Genomic Analysis of a Multiply Antimicrobial Resistant Enterotoxigenic E. coli O157 Lineage from Australian Pigs

Wyrsch E, Roy Chowdhury P, Abraham S, Santos J, Darling A, Charles IG, Chapman T, Djordjevic SP. BMC Genomics. 2015 Mar 10;16:165. doi: 10.1186/s12864-015-1382-y.

22. A Versatile Cost Effective Method For The Analysis of Fresh Frozen Tissue Sections Via Matrix Assisted Laser Desorption Ionisation Imaging Mass Spectrometry (MALDI-IMS)

O’Rourke M, Djordjevic SP, Padula MP. Rapid Communications in Mass Spectrometry. 2015 Mar 29(7):637-644. doi: 10.1002/rcm.7138.

21. A role for Tn6029 in the evolution of the complex antibiotic resistance gene loci in genomic island 3 in enteroaggregative hemorrhagic Escherichia coli O104:H4

Roy Chowdhury P, Charles IG, Djordjevic SP. PLoS One. 2015 Feb 12; 10(2):e0115781. doi: 10.1371/journal.pone.0115781.

20. MHJ_0461 is a multifunctional leucine aminopeptidase on the surface of Mycoplasma hyopneumoniae

Jarocki VM, Santos J, Tacchi JL, Raymond BBA, Deutscher AT, Jenkins C, Padula MP, Djordjevic SP. Open Biology. 2015 Jan 5(1). pii: 140175. doi: 10.1098/rsob.140175.

19. Mycoplasmal surface-associated aminopeptidases are multifunctional moonlighting proteins

Jarocki VM, Padula MP, Djordjevic SP. Inflammation and Cell Signaling. 2015 2: e828. doi: 10.14800/ics.828.

2014

18. Proteolytic processing of the cilium adhesin MHJ_0194 (P123J ) in Mycoplasma hyopneumoniae generates a functionally diverse array of cleavage fragments that bind multiple host molecules

Raymond BB, Jenkins C, Seymour LM, Tacchi JL, Widjaja M, Jarocki VM, Deutscher AT, Turnbull L, Whitchurch CB, Padula MP, Djordjevic SP. Cellular Microbiology. 2014 Oct 3. doi: 10.1111/cmi.12377.

17. A draft genome of Escherichia coli sequence Type 127 Strain 2009-46

Darling AE, McKinnon J, Worden P, Santos J, Charles IG, Roy Chowdhury P, Djordjevic SP. Gut Pathogens. 2014 Sept 1;6:32. doi: 10.1186/1757-4749-6-32.

16. Proteome Analysis of Multidrug Resistant Breast Cancer Derived Microparticles

Pokharel D, Padula MP, Lu JF, Tacchi JL, Luk F, Djordjevic SP, Bebawy M. Journal of Extracellular Vesicles. 2014 Aug 22;3. doi: 10.3402/jev.v3.24384.

15. Genomic interplay in bacterial communities: Implications for growth promoting practices in animal husbandry

Roy Chowdhury P, McKinnon J, Wyrsch E, Hammond JM, Charles IG, Djordjevic SP. Front Microbiol. 2014 Aug 12;5:394. doi: 10.3389/fmicb.2014.00394.

14. Proteogenomic mapping of Mycoplasma hyopneumoniae virulent strain 232

Pendarvis K, Padula MP, Tacchi JL, Petersen AC, Djordjevic SP, Burgess SC, Minion FC. BMC Genomics. 2014 Jul 8;15(1):576. doi: 10.1186/1471-2164-15-576.

13. Evaluation of recombinant Mycoplasma hyopneumoniae P97/P102 paralogs formulated with selected adjuvants as vaccines against Mycoplasmal pneumonia in pigs

Woolley LK, Fell SA Gonsalves JR, Raymond BB, Collins, D, Kuit TA, Walker MJ, Djordjevic SP, Eamens GJ, Jenkins C. Vaccine. 2014 Jun 12;32(34):4333-41. doi: 10.1016/j.vaccine.2014.06.008.

12. Cilium adhesim P216 (MHJ_0493) is a target of ectodomain shedding and aminopeptidase activity on the surface of Mycoplasma hyopneumoniae

Tacchi JL, Raymond BB, Jarocki VM, Berry IJ, Padula MP, Djordjevic SP. Journal of Proteome Research. 2014 Jun 6;13(6):2920-30. doi: 10.1021/pr500087c.

11. The genome of Clostridium difficile 5.3

Darling AE, Worden P, Chapman TA, Roy Chowdhury P, Charles IG, Djordjevic SP. Gut Pathogens. 2014 Feb 24;6:4. doi:10.1186/1757-4749-6-4.

10. Comparative proteomics and glycoproteomics reveal increased N-linked glycosylation and relaxed sequon specificity in Campylobacter jejuni NCTC11168 O

Scott NE, Marzook NB, Cain JA, Solis N, Thaysen-Andersen M, Djordjevic SP, Packer NH, Larsen MR, Cordwell SJ. Journal of Proteome Research. 2014 13(11):5136-50. doi: 10.1021/pr5005554.

9. Chapter 5: Post-translational modification of proteins in the Mollicutes

Djordjevic SP and Tacchi JL. In Mollicutes: Molecular Biology & Pathogenesis. 2014. Editors: Browning GF & Citti C. Caister Academic Press.

2013

8. P159 from Mycoplasma hyopneumoniae binds porcine cilia and heparin and is cleaved in a manner akin to ectodomain shedding

Raymond BBA, Tacchi JL, Jarocki VM, Minion FC, Padula MP, & Djordjevic SP. Journal of Proteome Research. 2013 Dec 6;12(12):5891-903. doi: 10.1021/pr400903s.

7. Sequences of two related multiple antibiotic resistance virulence plasmids sharing a unique IS 26-related molecular signature isolated from different Escherichia coli pathotypes from different hosts

Venturini C, Hassan KA, Roy Chodhury P, Paulsen IT, Walker MJ, Djordjevic SP. PLoS ONE. 2013 Nov 4;8:11. doi: 10.1371/journal.pone.0078862.

6. Plasmin activity in the porcine airways is enhanced during experimental infection with Mycoplasma hyopneumoniae, is positively correlated with proinflammatory cytokine levels and is ameliorated by vaccination

Woolley LK, Fell S, Djordjevic SP, & Eamens GJ, Jenkins C. Veterinary Microbiology. 2013 May 31;164(1-2):60-6. doi: 10.1016/j.vetmic.2013.02.003.

5. Mobile elements, zoonotic pathogens and commercial bacteria: conduits for the delivery of resistance genes into humans, production animals and soil microbiota

Djordjevic SP, Stokes HW, Roy Chowdhury P. Front Microbiol. 2013 Apr 30;4.86. doi:10.3389/fmicb.2013.00086. Print 2013

4. MHJ_0125 is a M42 glutamyl aminopeptidase that moonlights as a multifunctional adhesin on the surface of Mycoplasma hyopneumoniae

Robinson MW, Buchtmann KA, Jenkins C, Tacchi JL, Raymond BBA, To J, Roy Chowdhury P, Woolley LK, Labbate M, Turnbull L, Whitchurch CB, Padula MP, Djordjevic SP.

Open Biology. 2013 Apr 17;3(4):130017. doi: 10.1098/rsob.130017.

3. Deletion of Integron-associated gene cassettes impact on the surface properties of Vibrio rotiferianus DAT722

Rapa R, Shimmon R, Djordjevic SP, Stokes HW, Labbate M. PLoS One. 2013 Mar 6;8(3):e58430. doi:10.1371/journal.pone.0058430.

2. Indigenous Vibrio cholerae strains from a non-endemic region are pathogenic

Islam A, Labbate M, Alam M, Djordjevic SP, Darling A, Melvold J, Holmes AJ, Johura FT, Cravioto A, Charles IG, Stokes HW. Open Biology. 2013 Feb 13;3(2):120181. doi: 10.1098/rsob.120181.

1. Chapter 4: mobilized integrons: team players in the spread of antibiotic resistance genes.

Martinez E, Djordjevic SP, Stokes HW, and Roy Chowdhury P. In Lateral Gene Transfer in Evolution. 2013. Pages 79-103. Edited by Uri Gophna. Springer Books. doi: 10.1007/978-1-4614-7780-8_4.